STRINGSTRING
PBAL39_07235 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_07235" - RNA polymerase sigma factor (Possible RNA polymerase sigma-24 factor) in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_07235RNA polymerase sigma factor (Possible RNA polymerase sigma-24 factor) (214 aa)    
Predicted Functional Partners:
PBAL39_07230
Putative anti-sigma factor (325 aa)
 
          0.752
PBAL39_07240
Alpha-rhamnosidase (901 aa)
              0.709
PBAL39_12383
RNA polymerase ECF-type sigma factor (176 aa)
   
          0.706
PBAL39_07245
Rhamnosidase A (920 aa)
              0.678
PBAL39_12378
Putative anti sigma factor (349 aa)
   
          0.638
PBAL39_16776
Putative outer membrane protein (516 aa)
   
          0.627
PBAL39_16836
Uncharacterized protein (1080 aa)
   
          0.531
PBAL39_07260
Short chain dehydrogenase (706 aa)
              0.525
PBAL39_07255
Putative sugar isomerase protein (433 aa)
              0.525
PBAL39_07250
Carbohydrate kinase, FGGY (451 aa)
              0.525
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
Server load: low (16%) [HD]