STRINGSTRING
PBAL39_07245 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_07245" - Rhamnosidase A in Pedobacter sp. BAL39
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_07245Rhamnosidase A (920 aa)    
Predicted Functional Partners:
PBAL39_07260
Short chain dehydrogenase (706 aa)
 
          0.860
PBAL39_07240
Alpha-rhamnosidase (901 aa)
 
       
0.849
PBAL39_07255
Putative sugar isomerase protein (433 aa)
 
          0.846
PBAL39_07250
Carbohydrate kinase, FGGY (451 aa)
 
     
  0.712
PBAL39_07235
RNA polymerase sigma factor (Possible RNA polymerase sigma-24 factor) (214 aa)
              0.678
PBAL39_16611
Putative glycosyslhydrolase (1031 aa)
 
          0.666
PBAL39_23717
L-arabinose isomerase ; Catalyzes the conversion of L-arabinose to L-ribulose (486 aa)
   
          0.652
PBAL39_07265
RhaT l-rhamnose-proton symport 2 (359 aa)
              0.613
PBAL39_07230
Putative anti-sigma factor (325 aa)
              0.514
PBAL39_14799
Glycoside hydrolase family 2, sugar binding protein (1081 aa)
 
          0.500
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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