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PBAL39_07630 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_07630" - RNA polymerase ECF-type sigma factor in Pedobacter sp. BAL39
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_07630RNA polymerase ECF-type sigma factor (198 aa)    
Predicted Functional Partners:
PBAL39_09036
Putative ECF-type RNA polymerase (194 aa)
   
          0.680
PBAL39_07635
Uncharacterized protein (41 aa)
              0.616
PBAL39_07625
Putative anti-sigma factor (387 aa)
              0.586
PBAL39_10181
RNA polymerase ECF-type sigma factor (192 aa)
   
          0.539
PBAL39_11327
Putative RNA polymerase ECF-type sigma factor (191 aa)
   
          0.477
PBAL39_07640
Transcriptional regulator, Crp/Fnr family protein (891 aa)
              0.470
PBAL39_07620
Putative outer membrane protein (1126 aa)
              0.400
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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