STRINGSTRING
PBAL39_08145 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_08145" - Uncharacterized protein in Pedobacter sp. BAL39
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_08145Uncharacterized protein (134 aa)    
Predicted Functional Partners:
PBAL39_08140
tRNA-uridine isomerase I ; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs (283 aa)
              0.665
PBAL39_08135
ABC transporter, ATP-binding/membrane-spanning protein (590 aa)
              0.665
PBAL39_03739
Uncharacterized protein (816 aa)
   
          0.640
PBAL39_08150
ATP-dependent RNA helicase (620 aa)
              0.616
PBAL39_06221
Possible biopolymer transport protein (133 aa)
   
          0.615
PBAL39_25425
Membrane spanning protein, required for outer membrane integrity (526 aa)
   
          0.597
PBAL39_05478
Uncharacterized protein (176 aa)
   
          0.554
PBAL39_03769
Uncharacterized protein (964 aa)
   
          0.532
PBAL39_25415
Outer membrane assembly protein (422 aa)
   
          0.523
PBAL39_00015
Uncharacterized protein (267 aa)
   
          0.504
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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