STRINGSTRING
rlmH protein (Pedobacter sp. BAL39) - STRING interaction network
"rlmH" - rRNA in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rlmHrRNA (pseudouridine-N3-)-methyltransferase RlmH ; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA (157 aa)    
Predicted Functional Partners:
PBAL39_08195
DNA mismatch repair protein mutS (605 aa)
              0.665
PBAL39_08205
Uncharacterized protein (39 aa)
              0.664
rsfS
Ribosomal silencing factor RsfS ; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation (124 aa)
   
   
  0.652
prmA
Ribosomal protein L11 methyltransferase (279 aa)
 
     
  0.620
PBAL39_08190
Beta-glucosidase (445 aa)
              0.558
rplU
50S ribosomal protein L21 ; This protein binds to 23S rRNA in the presence of protein L20 (103 aa)
 
     
  0.528
engB
Probable GTP-binding protein EngB ; Necessary for normal cell division and for the maintenance of normal septation (209 aa)
 
   
  0.523
PBAL39_07840
Metallo-beta-lactamase superfamily protein (263 aa)
 
   
  0.509
PBAL39_06491
Fmu (Sun) domain protein (388 aa)
   
   
  0.497
PBAL39_04638
Carboxy-terminal processing protease (528 aa)
 
        0.476
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
Server load: low (11%) [HD]