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STRINGSTRING
EDM34345.1 protein (Pedobacter sp. BAL39) - STRING interaction network
"EDM34345.1" - Probably involved in nutrient binding in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM34345.1Probably involved in nutrient binding; COG1629 Outer membrane receptor proteins, mostly Fe transport (1072 aa)    
Predicted Functional Partners:
EDM34344.1
annotation not available (471 aa)
          0.919
EDM34342.1
Uncharacterized protein; COG1409 Predicted phosphohydrolases (461 aa)
 
          0.782
EDM35479.1
annotation not available (498 aa)
   
 
      0.779
EDM38053.1
annotation not available (492 aa)
 
      0.767
EDM36963.1
Probably involved in nutrient binding; COG1629 Outer membrane receptor proteins, mostly Fe transport (1018 aa)
   
        0.728
EDM37764.1
Putative outer membrane protein; Probably involved in nutrient binding (453 aa)
   
          0.715
EDM36239.1
annotation not available (470 aa)
   
          0.705
EDM33968.1
Uncharacterized protein; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing (502 aa)
 
 
      0.702
EDM36256.1
annotation not available (462 aa)
   
          0.692
EDM35378.1
annotation not available (459 aa)
   
          0.689
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter sp. BAL39
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