STRINGSTRING
PBAL39_08756 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_08756" - Uncharacterized protein in Pedobacter sp. BAL39
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_08756Uncharacterized protein (96 aa)    
Predicted Functional Partners:
recF
DNA replication and repair protein RecF ; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP (367 aa)
              0.880
PBAL39_08766
TPR domain protein (223 aa)
 
          0.671
PBAL39_20620
Gliding motility-related protein possible outer membrane protein (216 aa)
   
          0.649
PBAL39_06201
Uncharacterized protein (1005 aa)
   
          0.643
PBAL39_06866
Uncharacterized protein (197 aa)
   
          0.611
PBAL39_08055
Uncharacterized protein (109 aa)
   
          0.570
PBAL39_09791
Preprotein translocase ATPase subunit (165 aa)
   
          0.560
PBAL39_09631
Uncharacterized protein (86 aa)
   
          0.556
rnpA
Protein C5 ; RNaseP catalyzes the removal of the 5’-leader sequence from pre-tRNA to produce the mature 5’-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5’-leader sequence and broadening the substrate specificity of the ribozyme (145 aa)
   
          0.554
PBAL39_06221
Possible biopolymer transport protein (133 aa)
   
          0.536
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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