STRINGSTRING
PBAL39_08821 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_08821" - Pseudouridine synthase in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_08821Pseudouridine synthase (463 aa)    
Predicted Functional Partners:
PBAL39_12433
Pseudouridine synthase ; Responsible for synthesis of pseudouridine from uracil (343 aa)
 
  0.864
PBAL39_08826
3-carboxymuconate cyclase-like protein (370 aa)
              0.852
der
GTP-binding protein EngA ; GTPase that plays an essential role in the late steps of ribosome biogenesis (433 aa)
 
   
  0.825
truB
tRNA-uridine isomerase ; Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs (258 aa)
 
   
  0.798
PBAL39_18099
Pseudouridylate synthase (240 aa)
 
  0.773
PBAL39_03232
tRNA pseudouridine synthase C (235 aa)
 
  0.733
PBAL39_08010
Ribosomal large subunit pseudouridine synthase D (228 aa)
 
  0.716
PBAL39_03904
tRNA-uridine isomerase I ; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs (267 aa)
 
   
  0.664
PBAL39_13847
Putative methyltransferase (174 aa)
 
        0.657
PBAL39_08140
tRNA-uridine isomerase I ; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs (283 aa)
 
   
  0.597
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
Server load: low (4%) [HD]