STRINGSTRING
PBAL39_08906 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_08906" - Putative transmembrane rhomboid family protein in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_08906Putative transmembrane rhomboid family protein (250 aa)    
Predicted Functional Partners:
PBAL39_08901
Putative transmembrane rhomboid family protein (287 aa)
 
     
0.924
PBAL39_08896
Endonuclease/exonuclease/phosphatase family protein (370 aa)
         
  0.900
mutL
DNA mismatch repair protein MutL ; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a "molecular matchmaker", a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex (615 aa)
              0.899
PBAL39_08891
Cysteinyl-tRNA synthetase (486 aa)
              0.806
PBAL39_10691
Uncharacterized protein (202 aa)
   
          0.743
PBAL39_02102
Glutamate synthase, large subunit (1182 aa)
     
   
  0.645
PBAL39_08886
Cysteinyl-tRNA synthetase (287 aa)
              0.619
PBAL39_08766
TPR domain protein (223 aa)
 
          0.585
yidC
Membrane protein YidC ; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins (598 aa)
   
        0.579
PBAL39_08916
Beta-N-acetylglucosaminidase (604 aa)
              0.560
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
Server load: low (7%) [HD]