Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
Genes that are sometimes fused into single open reading frames.
Automated, unsupervised textmining - searching for proteins that are frequently mentioned together.
Proteins whose genes are observed to be correlated in expression, across a large number of experiments.
STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
Uncharacterized protein (387 aa)
Predicted Functional Partners:
Uncharacterized protein (166 aa)
Uncharacterized protein (119 aa)
Uncharacterized protein (1473 aa)
tRNA-i(6)A37 methylthiotransferase ; Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine (482 aa)
Uncharacterized protein (399 aa)
Transcriptional regulator, sigma-54-related protein (409 aa)
Probable integral outer membrane protein (566 aa)
Uncharacterized protein (669 aa)
Putative outer membrane protein (431 aa)
Uncharacterized protein (179 aa)
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596 Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39