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PBAL39_10196 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_10196" - DEAD box-related helicase (ATP-dependent RNA helicase) in Pedobacter sp. BAL39
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_10196DEAD box-related helicase (ATP-dependent RNA helicase) (412 aa)    
Predicted Functional Partners:
PBAL39_14739
Possible ATP-dependent RNA helicase (376 aa)
   
   
 
0.845
PBAL39_14794
RNA binding protein (107 aa)
   
  0.782
PBAL39_02317
RNA-binding protein (100 aa)
   
  0.782
PBAL39_25390
Cold shock protein (63 aa)
   
  0.778
PBAL39_23002
Cold shock protein (63 aa)
   
  0.778
PBAL39_14274
Cold shock protein (63 aa)
   
  0.778
PBAL39_11592
Cold shock protein (63 aa)
   
  0.778
PBAL39_01347
Stress protein, member of the CspA-family (68 aa)
   
  0.778
rplA
50S ribosomal protein L1 ; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release (232 aa)
   
  0.766
rplR
50S ribosomal protein L18 ; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance (117 aa)
     
  0.761
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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