STRINGSTRING
rimP protein (Pedobacter sp. BAL39) - STRING interaction network
"rimP" - Ribosome maturation factor RimP in Pedobacter sp. BAL39
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rimPRibosome maturation factor RimP ; Required for maturation of 30S ribosomal subunits (154 aa)    
Predicted Functional Partners:
nusA
Transcription termination/antitermination protein NusA ; Participates in both transcription termination and antitermination (411 aa)
              0.880
infB
Translation initiation factor IF-2 ; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex (1013 aa)
              0.681
PBAL39_06031
Ferric uptake regulator protein (163 aa)
   
          0.631
PBAL39_10491
Uncharacterized protein (235 aa)
              0.558
PBAL39_00887
Uncharacterized protein (329 aa)
   
          0.410
PBAL39_10496
Uncharacterized protein (141 aa)
              0.404
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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