STRINGSTRING
EDM34502.1 protein (Pedobacter sp. BAL39) - STRING interaction network
"EDM34502.1" - annotation not available in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM34502.1annotation not available (529 aa)    
Predicted Functional Partners:
EDM34503.1
Probably involved in nutrient binding; COG4206 Outer membrane cobalamin receptor protein (1046 aa)
 
          0.956
EDM36973.1
Alpha-L-rhamnosidase; COG3408 Glycogen debranching enzyme (786 aa)
   
          0.650
EDM38043.1
Alpha-L-rhamnosidase; COG3408 Glycogen debranching enzyme (792 aa)
   
          0.546
EDM37250.1
Uncharacterized protein; COG0518 GMP synthase - Glutamine amidotransferase domain (282 aa)
   
          0.538
EDM33965.1
annotation not available (434 aa)
   
          0.515
EDM35516.1
Uncharacterized protein; COG1846 Transcriptional regulators (150 aa)
   
          0.507
EDM33964.1
annotation not available (1045 aa)
   
          0.483
EDM37251.1
Uncharacterized protein; COG0143 Methionyl-tRNA synthetase (395 aa)
   
          0.467
EDM37775.1
annotation not available (402 aa)
   
          0.458
EDM35519.1
COG1538 Outer membrane protein (432 aa)
   
          0.428
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter sp. BAL39
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