STRINGSTRING
PBAL39_10945 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_10945" - Uncharacterized protein in Pedobacter sp. BAL39
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_10945Uncharacterized protein (479 aa)    
Predicted Functional Partners:
PBAL39_10940
Putative gliding motility protein (159 aa)
              0.880
rny
Ribonuclease Y ; Endoribonuclease that initiates mRNA decay (520 aa)
 
          0.759
PBAL39_10950
DNA polymerase III gamma/tau subunit (382 aa)
         
  0.677
PBAL39_08731
Uncharacterized protein (336 aa)
   
          0.595
ftsY
Signal recognition particle receptor FtsY ; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) (320 aa)
     
      0.474
PBAL39_04703
Uncharacterized protein (108 aa)
 
          0.462
tilS
tRNA(Ile)-lysidine synthetase ; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine (461 aa)
   
          0.460
PBAL39_09511
Uroporphyrinogen-III synthase (256 aa)
   
          0.451
PBAL39_10955
Putative pre-16S rRNA nuclease ; Could be a nuclease involved in processing of the 5’-end of pre-16S rRNA (138 aa)
              0.450
PBAL39_09481
Candidate bifunctional family GT51 b-glycosyltransferase/PBP transpeptidase, candidate murein polymerase (741 aa)
         
  0.444
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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