STRINGSTRING
def protein (Pedobacter sp. BAL39) - STRING interaction network
"def" - Polypeptide deformylase in Pedobacter sp. BAL39
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Predicted Interactions
gene neighborhood
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gene co-occurrence
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textmining
co-expression
protein homology
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defPolypeptide deformylase ; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (184 aa)    
Predicted Functional Partners:
fmt
Methionyl-tRNA formyltransferase ; Modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by- (I) promoting its recognition by IF2 and (II) impairing its binding to EFTu-GTP (297 aa)
 
  0.957
PBAL39_10900
Methionyl-tRNA synthetase ; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation (716 aa)
   
 
  0.916
PBAL39_10990
Magnesium chelatase, subunit ChlI (393 aa)
          0.895
clpP
Endopeptidase Clp ; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins (233 aa)
 
   
  0.851
PBAL39_11352
Putative zinc protease ymxG (409 aa)
   
        0.804
rplQ
50S ribosomal protein L17 (179 aa)
   
 
  0.787
folD
Bifunctional protein FolD ; Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate (293 aa)
       
  0.763
PBAL39_11347
Uncharacterized protein (390 aa)
              0.657
PBAL39_11342
Uncharacterized protein (325 aa)
              0.657
rplV
50S ribosomal protein L22 ; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g., L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (104 aa)
     
      0.634
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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