STRINGSTRING
PBAL39_11487 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_11487" - GTP cyclohydrolase 1 type 2 homolog in Pedobacter sp. BAL39
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_11487GTP cyclohydrolase 1 type 2 homolog (365 aa)    
Predicted Functional Partners:
PBAL39_11482
Uncharacterized protein (247 aa)
 
          0.930
PBAL39_11497
Uncharacterized protein (108 aa)
              0.759
PBAL39_11492
TM2 domain family protein (119 aa)
              0.759
PBAL39_11477
Uncharacterized protein (494 aa)
              0.747
PBAL39_19250
Uridine kinase (215 aa)
   
      0.576
mfd
Transcription-repair-coupling factor ; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site (1114 aa)
              0.575
PBAL39_11507
Uncharacterized protein (70 aa)
              0.570
PBAL39_19474
Putative allophanate hydrolase (573 aa)
   
 
  0.565
dnaG
DNA primase ; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication (668 aa)
 
        0.527
PBAL39_19694
RNA polymerase sigma-70 factor ; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (286 aa)
     
 
  0.523
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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