Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
Genes that are sometimes fused into single open reading frames.
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
tRNA-dihydrouridine synthase ; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines (335 aa)
Predicted Functional Partners:
Metal-dependent membrane protease (330 aa)
ApaG (128 aa)
Phosphatidate cytidylyltransferase (269 aa)
Mechanosensitive ion channel protein (780 aa)
Probable periplasmic binding protein possible mechanosensitive ion channel component (767 aa)
Probable periplasmic binding protein possible mechanosensitive ion channel component (778 aa)
DNA polymerase I (937 aa)
Sulfite reductase (NADPH) (698 aa)
Two component, sigma54 specific, transcriptional regulator, Fis family protein (446 aa)
C4-dicarboxylate transport transcriptional regulatory protein (468 aa)
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596 Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39