STRINGSTRING
PBAL39_11662 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_11662" - ABC transporter, ATP-binding protein in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_11662ABC transporter, ATP-binding protein (205 aa)    
Predicted Functional Partners:
PBAL39_21590
Possible ABC transport permease, cytochrome c biogenesis (244 aa)
 
   
    0.879
lpxC
UDP-3-O-[R-3-hydroxymyristoyl]-N-acetylglucosamine deacetylase ; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis (469 aa)
         
  0.871
PBAL39_11657
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase ; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell (261 aa)
              0.864
lpxD
UDP-3-O-acylglucosamine N-acyltransferase ; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell (357 aa)
              0.864
PBAL39_21585
Possible ABC transport permease, cytochrome c biogenesis (218 aa)
 
   
  0.847
PBAL39_21145
Molybdenum ABC transporter, ATP-binding protein (209 aa)
 
   
    0.843
PBAL39_13442
ABC transporter, ATP-binding protein (596 aa)
   
  0.783
PBAL39_08030
Transport permease protein (363 aa)
   
  0.777
PBAL39_22570
Uncharacterized protein (791 aa)
   
 
  0.738
PBAL39_21670
ABC transporter permease gliding motility-associated protein (242 aa)
   
 
  0.738
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
Server load: low (9%) [HD]