STRINGSTRING
PBAL39_11777 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_11777" - Putative RNA polymerase sigma factor in Pedobacter sp. BAL39
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_11777Putative RNA polymerase sigma factor (194 aa)    
Predicted Functional Partners:
PBAL39_11772
Uncharacterized protein (168 aa)
              0.860
PBAL39_25095
Putative RNA polymerase sigma factor (152 aa)
   
          0.778
PBAL39_24345
RNA polymerase ECF-type sigma factor (198 aa)
   
          0.775
PBAL39_00195
RNA polymerase ECF-type sigma factor (199 aa)
   
          0.774
PBAL39_23047
RNA polymerase sigma-70 factor, ECF subfamily protein (167 aa)
   
          0.770
PBAL39_20950
RNA polymerase ECF-type sigma factor (199 aa)
   
          0.769
PBAL39_16424
RNA polymerase ECF-type sigma factor (201 aa)
   
          0.768
PBAL39_11782
Uncharacterized protein (98 aa)
              0.767
PBAL39_20314
RNA polymerase ECF-type sigma factor (196 aa)
   
          0.763
PBAL39_19899
Putative RNA polymerase sigma factor (194 aa)
   
          0.730
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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