STRINGSTRING
PBAL39_11897 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_11897" - RNA polymerase, sigma-24 subunit, ECF subfamily protein in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_11897RNA polymerase, sigma-24 subunit, ECF subfamily protein (150 aa)    
Predicted Functional Partners:
PBAL39_11907
Uncharacterized protein (449 aa)
 
          0.911
PBAL39_11902
Uncharacterized protein (177 aa)
              0.880
PBAL39_24345
RNA polymerase ECF-type sigma factor (198 aa)
   
          0.776
PBAL39_07560
Putative extracytoplasmic function alternative sigma factor (177 aa)
   
          0.775
PBAL39_23047
RNA polymerase sigma-70 factor, ECF subfamily protein (167 aa)
   
          0.773
PBAL39_24038
RNA polymerase sigma factor/ECF subfamily (Sigma-70) (191 aa)
   
          0.772
PBAL39_17704
RNA polymerase ECF-type sigma factor (177 aa)
   
          0.764
PBAL39_16424
RNA polymerase ECF-type sigma factor (201 aa)
   
          0.761
PBAL39_04139
Putative extracytoplasmic function alternative sigma factor (176 aa)
   
          0.761
PBAL39_00702
RNA polymerase sigma factor (Possible RNA polymerase sigma-24 factor) (197 aa)
   
          0.754
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
Server load: low (8%) [HD]