STRINGSTRING
trmB protein (Pedobacter sp. BAL39) - STRING interaction network
"trmB" - tRNA(m7G46)-methyltransferase in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmBtRNA(m7G46)-methyltransferase ; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA (216 aa)    
Predicted Functional Partners:
PBAL39_11987
Probable methylated DNA-protein cysteine methyltransferase (108 aa)
   
        0.670
fcl
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase ; Catalyzes the two-step NADP-dependent conversion of GDP- 4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction (315 aa)
   
        0.638
PBAL39_13847
Putative methyltransferase (174 aa)
 
 
    0.577
PBAL39_06491
Fmu (Sun) domain protein (388 aa)
   
 
  0.570
PBAL39_12433
Pseudouridine synthase ; Responsible for synthesis of pseudouridine from uracil (343 aa)
 
   
  0.553
ksgA
S-adenosylmethionine-6-N’, N’-adenosyl(rRNA) dimethyltransferase ; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits (260 aa)
   
   
  0.550
PBAL39_03232
tRNA pseudouridine synthase C (235 aa)
 
   
  0.545
guaA
Glutamine amidotransferase ; Catalyzes the synthesis of GMP from XMP (509 aa)
   
   
  0.543
PBAL39_08010
Ribosomal large subunit pseudouridine synthase D (228 aa)
 
   
  0.542
PBAL39_11967
Redox-sensitive transcriptional activator OxyR, LysR family protein (310 aa)
              0.539
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
Server load: low (8%) [HD]