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prfC protein (Pedobacter sp. BAL39) - STRING interaction network
"prfC" - Peptide chain release factor 3 in Pedobacter sp. BAL39
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second shell of interactors
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proteins of unknown 3D structure
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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prfCPeptide chain release factor 3 ; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP (526 aa)    
Predicted Functional Partners:
guaA
Glutamine amidotransferase ; Catalyzes the synthesis of GMP from XMP (509 aa)
   
   
  0.562
PBAL39_12007
DNA polymerase I (937 aa)
 
     
  0.537
PBAL39_11572
ABC transporter ATP-binding protein (620 aa)
 
        0.529
PBAL39_12102
Uncharacterized protein (491 aa)
              0.507
smpB
Small protein B ; Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a "tag peptide", a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to tra [...] (149 aa)
       
      0.467
PBAL39_02102
Glutamate synthase, large subunit (1182 aa)
           
  0.448
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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