STRINGSTRING
PBAL39_12102 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_12102" - Uncharacterized protein in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_12102Uncharacterized protein (491 aa)    
Predicted Functional Partners:
PBAL39_17754
Outer membrane protein (449 aa)
   
          0.732
PBAL39_03227
Uncharacterized protein (153 aa)
   
          0.730
PBAL39_04413
Putative outer membrane protein (596 aa)
   
          0.661
PBAL39_04418
Uncharacterized protein (1071 aa)
   
          0.632
PBAL39_18694
Putative outer membrane protein (505 aa)
   
          0.549
PBAL39_15484
Uncharacterized protein (284 aa)
   
          0.547
PBAL39_18239
ABC transporter, permease component (332 aa)
   
          0.541
PBAL39_20985
Uncharacterized protein (92 aa)
   
          0.516
PBAL39_07760
Uncharacterized protein (525 aa)
   
          0.513
prfC
Peptide chain release factor 3 ; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP (526 aa)
              0.507
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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