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rnc protein (Pedobacter sp. BAL39) - STRING interaction network
"rnc" - Ribonuclease III in Pedobacter sp. BAL39
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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rncRibonuclease III ; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism (242 aa)    
Predicted Functional Partners:
rpsB
30S ribosomal protein S2 (276 aa)
   
 
  0.856
PBAL39_12137
3-oxoacyl-[acyl-carrier-protein] synthase 2 ; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP (417 aa)
   
   
  0.795
rplS
50S ribosomal protein L19 ; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site (115 aa)
 
 
  0.782
acpP
Acyl carrier protein ; Carrier of the growing fatty acid chain in fatty acid biosynthesis (78 aa)
   
   
  0.734
dnaG
DNA primase ; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication (668 aa)
 
   
  0.720
PBAL39_23852
50S ribosomal protein L28 (67 aa)
   
 
  0.716
PBAL39_08150
ATP-dependent RNA helicase (620 aa)
   
  0.706
PBAL39_10196
DEAD box-related helicase (ATP-dependent RNA helicase) (412 aa)
   
  0.701
lepA
Ribosomal back-translocase LepA ; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner (595 aa)
 
 
  0.697
rplD
50S ribosomal protein L4 ; Forms part of the polypeptide exit tunnel (209 aa)
   
 
  0.685
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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