STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM36456.1Hypothetical protein; COG0162 Tyrosyl-tRNA synthetase. (140 aa)    
Predicted Functional Partners:
EDM37328.1
seryl-tRNA synthetase.
  
     0.708
EDM37192.1
Hypothetical protein.
  
     0.697
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
       0.674
EDM36452.1
Hypothetical protein.
  
     0.655
EDM36145.1
Hypothetical protein; COG1011 Predicted hydrolase (HAD superfamily).
  
     0.640
EDM37371.1
Hypothetical protein.
  
     0.637
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
       0.634
EDM37227.1
Hypothetical protein.
  
     0.629
EDM35990.1
COG3637 Opacity protein and related surface antigens.
  
     0.616
EDM36369.1
Hypothetical protein; COG0578 Glycerol-3-phosphate dehydrogenase.
  
     0.606
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.