STRINGSTRING
PBAL39_12227 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_12227" - DNA helicase in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_12227DNA helicase (1080 aa)    
Predicted Functional Partners:
PBAL39_12232
Uncharacterized protein (970 aa)
 
     
  0.972
PBAL39_13857
ATP-dependent exoDNAse (Exonuclease V) (477 aa)
 
  0.954
PBAL39_25450
Helicase-related protein (639 aa)
   
  0.917
PBAL39_10101
Helicase-related protein (759 aa)
   
  0.917
PBAL39_12222
Uncharacterized protein (165 aa)
              0.771
PBAL39_08851
Uncharacterized protein (802 aa)
   
          0.750
PBAL39_13657
Uncharacterized protein (227 aa)
   
          0.732
PBAL39_24068
Uncharacterized protein (1473 aa)
   
          0.703
PBAL39_06496
Uncharacterized protein (399 aa)
   
          0.690
PBAL39_08766
TPR domain protein (223 aa)
   
          0.645
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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