STRINGSTRING
PBAL39_12418 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_12418" - Putative outer membrane protein in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_12418Putative outer membrane protein (553 aa)    
Predicted Functional Partners:
PBAL39_12413
Putative outer membrane protein (1004 aa)
 
          0.967
PBAL39_07225
Putative outer membrane protein (1082 aa)
 
          0.798
PBAL39_00350
Putative outer membrane protein (993 aa)
 
          0.781
PBAL39_12373
Putative outer membrane protein (996 aa)
 
          0.763
PBAL39_17199
Putative outer membrane protein (1015 aa)
 
          0.707
PBAL39_05833
Uncharacterized protein (461 aa)
   
          0.699
PBAL39_03524
Uncharacterized protein (513 aa)
   
          0.692
PBAL39_12728
Putative TonB dependent receptor outer membrane protein (1061 aa)
 
          0.678
PBAL39_22887
Putative outer membrane protein (1055 aa)
 
          0.664
PBAL39_03025
Uncharacterized protein (531 aa)
   
          0.661
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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