STRINGSTRING
PBAL39_12453 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_12453" - DNA topoisomerase IB in Pedobacter sp. BAL39
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
PBAL39_12453DNA topoisomerase IB (355 aa)    
Predicted Functional Partners:
PBAL39_16896
ATP-dependent DNA ligase (908 aa)
 
      0.730
PBAL39_23552
DNA topoisomerase IV subunit B (642 aa)
     
 
  0.698
PBAL39_23527
DNA topoisomerase IV subunit A (1019 aa)
     
 
  0.698
gyrB
DNA gyrase subunit B ; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner (652 aa)
     
 
  0.698
gyrA
DNA gyrase subunit A ; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner (869 aa)
     
 
  0.698
fmt
Methionyl-tRNA formyltransferase ; Modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by- (I) promoting its recognition by IF2 and (II) impairing its binding to EFTu-GTP (297 aa)
   
        0.654
PBAL39_07465
Putative oxidoreductase protein, short-chain dehydrogenase reductase (SDR)family (295 aa)
 
          0.629
ku
Non-homologous end joining protein Ku ; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5’- and 3’- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD (254 aa)
 
          0.581
PBAL39_14184
Putative outer membrane protein (199 aa)
 
          0.528
PBAL39_01672
Putative ATP-dependent DNA helicase (729 aa)
     
 
  0.522
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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