STRINGSTRING
PBAL39_12528 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_12528" - PIN domain protein in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_12528PIN domain protein (141 aa)    
Predicted Functional Partners:
PBAL39_12538
Uncharacterized protein (52 aa)
              0.859
PBAL39_12533
Valyl-tRNA synthetase (38 aa)
              0.859
PBAL39_12523
Uncharacterized protein (101 aa)
              0.859
PBAL39_12543
Valyl-tRNA synthetase ; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a "posttransfer" editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner (889 aa)
              0.648
PBAL39_05078
Uncharacterized protein (838 aa)
   
          0.593
PBAL39_04548
TraM-like protein (308 aa)
   
          0.572
PBAL39_23662
Uncharacterized protein (259 aa)
   
          0.533
PBAL39_07280
Uncharacterized protein (185 aa)
   
          0.506
PBAL39_20189
Uncharacterized protein (470 aa)
   
          0.470
PBAL39_15474
Uncharacterized protein (261 aa)
   
          0.450
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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