STRINGSTRING
PBAL39_12558 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_12558" - Transcription regulator in Pedobacter sp. BAL39
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_12558Transcription regulator (293 aa)    
Predicted Functional Partners:
PBAL39_19374
Transcriptional regulator (289 aa)
   
          0.741
PBAL39_10781
Putative AraC transcriptional regulatory protein (302 aa)
   
          0.713
PBAL39_03070
Two-component response regulator (326 aa)
   
          0.707
PBAL39_00657
Putative AraC-family regulatory protein (291 aa)
   
          0.707
PBAL39_25085
Transcriptional regulator, AraC family protein (285 aa)
   
          0.703
PBAL39_05123
Transcriptional regulator (307 aa)
   
          0.699
PBAL39_23722
Transcriptional regulator (306 aa)
   
          0.675
PBAL39_06681
Transcriptional regulator, AraC family protein (268 aa)
   
          0.670
PBAL39_12553
Siderophore-interacting protein (253 aa)
   
        0.665
PBAL39_25015
Transcriptional regulator, AraC family protein (271 aa)
   
          0.663
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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