STRINGSTRING
PBAL39_12578 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_12578" - Uncharacterized protein in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_12578Uncharacterized protein (215 aa)    
Predicted Functional Partners:
PBAL39_12573
Integral membrane protein (123 aa)
              0.837
PBAL39_15844
Cyclic nucleotide binding-regulatory protein (194 aa)
   
          0.778
PBAL39_10855
Cyclic nucleotide binding regulatory protein (191 aa)
   
          0.778
PBAL39_05623
Cyclic nucleotide binding-regulatory protein (195 aa)
   
          0.778
PBAL39_23077
Cyclic nucleotide binding regulatory protein (191 aa)
   
          0.777
PBAL39_19694
RNA polymerase sigma-70 factor ; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (286 aa)
       
  0.748
PBAL39_18429
RNA polymerase sigma-70 factor ; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (288 aa)
       
  0.748
PBAL39_06156
RNA polymerase sigma-70 factor ; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (286 aa)
       
  0.748
PBAL39_12583
Uncharacterized protein (145 aa)
              0.642
rpoA
Transcriptase subunit alpha ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (330 aa)
     
 
  0.628
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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