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EDM34316.1 protein (Pedobacter sp. BAL39) - STRING interaction network
"EDM34316.1" - COG0729 Outer membrane protein in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM34316.1COG0729 Outer membrane protein (808 aa)    
Predicted Functional Partners:
EDM35762.1
Conserved hypothetical lipoprotein; COG4105 DNA uptake lipoprotein (309 aa)
 
  0.835
EDM35815.1
COG2825 Outer membrane protein (185 aa)
 
 
  0.801
EDM34613.1
COG2911 Uncharacterized protein conserved in bacteria (1473 aa)
 
 
 
  0.790
EDM34383.1
COG0810 Periplasmic protein TonB, links inner and outer membranes (802 aa)
   
 
  0.784
EDM38153.1
annotation not available (893 aa)
   
 
  0.776
EDM34366.1
TPR domain protein; COG0457 FOG- TPR repeat (223 aa)
   
 
  0.774
EDM36339.1
annotation not available (542 aa)
   
          0.769
EDM35050.1
annotation not available (669 aa)
   
        0.761
EDM37225.1
annotation not available (431 aa)
   
          0.749
EDM37442.1
Uncharacterized protein; COG0457 FOG- TPR repeat (387 aa)
   
          0.739
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter sp. BAL39
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