STRINGSTRING
PBAL39_12885 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_12885" - Putative short-chain dehydrogenase in Pedobacter sp. BAL39
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_12885Putative short-chain dehydrogenase (111 aa)    
Predicted Functional Partners:
PBAL39_12890
Putative short-chain dehydrogenase (143 aa)
          0.964
PBAL39_12900
3-oxoacyl-[acyl-carrier-protein] reductase (248 aa)
 
          0.830
PBAL39_24088
Probable dehydrogenase/reductase (249 aa)
   
          0.753
PBAL39_20144
Uncharacterized protein (121 aa)
   
          0.725
PBAL39_09001
Short-chain dehydrogenase/reductase SDR (250 aa)
   
          0.678
PBAL39_05088
Short chain dehydrogenase (269 aa)
   
          0.671
PBAL39_16409
Short-chain dehydrogenase/reductase SDR (250 aa)
   
          0.649
PBAL39_16414
Uncharacterized protein (248 aa)
   
          0.643
PBAL39_02990
Glucose 1-dehydrogenase (262 aa)
   
          0.639
PBAL39_20134
Short-chain dehydrogenase/reductase SDR (250 aa)
   
          0.626
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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