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PBAL39_12930 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_12930" - RNA polymerase ECF-type sigma factor in Pedobacter sp. BAL39
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_12930RNA polymerase ECF-type sigma factor (194 aa)    
Predicted Functional Partners:
PBAL39_08791
RNA polymerase, sigma-E factor heat shock and oxidative stress (183 aa)
   
          0.669
PBAL39_11777
Putative RNA polymerase sigma factor (194 aa)
   
          0.614
PBAL39_00255
RNA polymerase, sigma-E factor heat shock and oxidative stress (190 aa)
   
          0.580
PBAL39_12935
Thioredoxin family protein (559 aa)
              0.569
PBAL39_11327
Putative RNA polymerase ECF-type sigma factor (191 aa)
   
          0.470
PBAL39_12940
Putative anti-sigma factor (396 aa)
              0.447
PBAL39_25095
Putative RNA polymerase sigma factor (152 aa)
   
          0.412
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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