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STRINGSTRING
EDM35377.1 protein (Pedobacter sp. BAL39) - STRING interaction network
"EDM35377.1" - Putative outer membrane protein in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM35377.1Putative outer membrane protein; Probably involved in nutrient binding; COG5295 Autotransporter adhesin (1173 aa)    
Predicted Functional Partners:
EDM35378.1
annotation not available (459 aa)
 
          0.965
EDM37524.1
annotation not available (469 aa)
   
          0.783
EDM36013.1
annotation not available (410 aa)
   
          0.779
EDM34178.1
annotation not available (450 aa)
   
          0.778
EDM34902.1
annotation not available (477 aa)
   
 
      0.771
EDM36498.1
Uncharacterized protein; COG0077 Prephenate dehydratase (502 aa)
   
          0.765
EDM36921.1
Uncharacterized protein; COG0457 FOG- TPR repeat (487 aa)
   
          0.757
EDM38907.1
annotation not available (497 aa)
   
          0.752
EDM36274.1
annotation not available (502 aa)
   
          0.746
EDM37999.1
annotation not available (456 aa)
   
          0.737
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter sp. BAL39
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