STRINGSTRING
PBAL39_12970 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_12970" - Isocitrate lyase in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_12970Isocitrate lyase (423 aa)    
Predicted Functional Partners:
PBAL39_08180
Aconitate hydratase (758 aa)
     
  0.866
PBAL39_12975
Uncharacterized protein (270 aa)
              0.834
PBAL39_05913
D-lactate dehydrogenase (328 aa)
       
  0.635
PBAL39_03754
Putative glycerate dehydrogenase (324 aa)
       
  0.635
PBAL39_23617
Keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase (217 aa)
         
  0.585
PBAL39_10081
Succinate dehydrogenase, flavoprotein subunit (Fumarate reductase, flavoprotein subunit) (659 aa)
     
 
  0.571
PBAL39_15144
Probable oxidoreductase (517 aa)
     
 
  0.557
PBAL39_16671
Uncharacterized protein (292 aa)
     
 
  0.555
pckA
Phosphoenolpyruvate carboxykinase [ATP] ; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA (533 aa)
   
   
  0.551
PBAL39_10076
Succinate dehydrogenase/fumarate reductase iron-sulfur (256 aa)
     
 
  0.540
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
Server load: low (5%) [HD]