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ychF protein (Pedobacter sp. BAL39) - STRING interaction network
"ychF" - Ribosome-binding ATPase YchF in Pedobacter sp. BAL39
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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ychFRibosome-binding ATPase YchF ; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner (364 aa)    
Predicted Functional Partners:
rplI
50S ribosomal protein L9 ; Binds to the 23S rRNA (147 aa)
 
  0.808
rpsB
30S ribosomal protein S2 (276 aa)
 
 
  0.753
rpsO
30S ribosomal protein S15 ; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome (92 aa)
   
 
  0.745
guaA
Glutamine amidotransferase ; Catalyzes the synthesis of GMP from XMP (509 aa)
   
   
  0.731
PBAL39_10900
Methionyl-tRNA synthetase ; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation (716 aa)
   
   
  0.729
rplF
50S ribosomal protein L6 ; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center (185 aa)
   
 
  0.727
ctc
General stress protein CTC ; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance (192 aa)
   
 
  0.716
thrS
Threonyl-tRNA synthetase (641 aa)
 
   
  0.713
rpsC
30S ribosomal protein S3 ; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation (281 aa)
     
 
  0.711
rpsG
30S ribosomal protein S7 ; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA (155 aa)
   
 
  0.704
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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