STRINGSTRING
PBAL39_13462 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_13462" - YajC in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_13462YajC (113 aa)    
Predicted Functional Partners:
PBAL39_13457
Uncharacterized protein (148 aa)
              0.789
PBAL39_13452
N utilization substance protein B homolog ; Involved in the transcription termination process (297 aa)
   
        0.788
PBAL39_13552
Protein-export membrane protein SecD/SecF ; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA (987 aa)
   
   
  0.760
coaE
Dephosphocoenzyme A kinase ; Catalyzes the phosphorylation of the 3’-hydroxyl group of dephosphocoenzyme A to form coenzyme A (199 aa)
              0.707
PBAL39_13467
Uncharacterized protein (315 aa)
              0.707
PBAL39_16821
Cation efflux protein (1042 aa)
   
 
      0.645
PBAL39_04169
Cation efflux protein (1063 aa)
   
 
      0.643
PBAL39_19509
AcrB/AcrD/AcrF family protein (1021 aa)
   
 
      0.641
PBAL39_22340
Putative transport related membrane protein (1090 aa)
   
 
      0.621
PBAL39_04293
Multidrug efflux membrane fusion protein (1034 aa)
   
 
      0.615
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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