STRINGSTRING
PBAL39_13477 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_13477" - Uncharacterized protein in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_13477Uncharacterized protein (313 aa)    
Predicted Functional Partners:
PBAL39_18274
DNA ligase (530 aa)
  0.970
PBAL39_13467
Uncharacterized protein (315 aa)
 
          0.878
coaE
Dephosphocoenzyme A kinase ; Catalyzes the phosphorylation of the 3’-hydroxyl group of dephosphocoenzyme A to form coenzyme A (199 aa)
              0.859
PBAL39_13482
Uncharacterized protein (53 aa)
              0.859
PBAL39_18284
ICC-like phosphoesterase (212 aa)
 
          0.853
PBAL39_18279
ATP-dependent helicase (852 aa)
 
          0.853
PBAL39_16896
ATP-dependent DNA ligase (908 aa)
 
  0.851
PBAL39_13487
Transcriptional regulator (149 aa)
              0.830
rpoC
Transcriptase subunit beta’ ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1428 aa)
     
    0.734
PBAL39_12007
DNA polymerase I (937 aa)
     
  0.682
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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