STRINGSTRING
PBAL39_14879 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_14879" - RNA polymerase, sigma-24 subunit, ECF subfamily protein in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_14879RNA polymerase, sigma-24 subunit, ECF subfamily protein (145 aa)    
Predicted Functional Partners:
PBAL39_14884
Uncharacterized protein (197 aa)
              0.859
PBAL39_08796
Uncharacterized protein (292 aa)
   
          0.728
PBAL39_14889
Putative NADH dehydrogenase with NAD(P)-binding domain (219 aa)
              0.695
PBAL39_06626
Uncharacterized protein (149 aa)
   
          0.670
PBAL39_02142
Putative TonB-linked outer membrane protein (985 aa)
   
          0.663
PBAL39_21915
TonB-dependent receptor domain protein (967 aa)
   
          0.503
PBAL39_14894
Uncharacterized protein (715 aa)
              0.500
PBAL39_11602
Uncharacterized protein (416 aa)
   
          0.495
PBAL39_11797
IG hypothetical 18565 (167 aa)
   
          0.477
PBAL39_13250
Uncharacterized protein (813 aa)
   
          0.469
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
Server load: low (3%) [HD]