STRINGSTRING
PBAL39_15014 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_15014" - RNA polymerase ECF-type sigma factor in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_15014RNA polymerase ECF-type sigma factor (193 aa)    
Predicted Functional Partners:
PBAL39_03364
Putative ECF-type RNA polymerase sigma factor (196 aa)
   
          0.539
PBAL39_07235
RNA polymerase sigma factor (Possible RNA polymerase sigma-24 factor) (214 aa)
   
          0.493
PBAL39_15009
Prophage LambdaCh01, thermonuclease (79 aa)
              0.488
PBAL39_15019
Putative anti-sigma factor (404 aa)
              0.477
PBAL39_12383
RNA polymerase ECF-type sigma factor (176 aa)
   
          0.425
PBAL39_17279
Putative RNA polymerase sigma factor (188 aa)
   
          0.421
PBAL39_07690
RNA polymerase ECF-type sigma factor (203 aa)
   
          0.405
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
Server load: low (3%) [HD]