STRINGSTRING
PBAL39_16289 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_16289" - Putative anti-sigma factor in Pedobacter sp. BAL39
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_16289Putative anti-sigma factor (393 aa)    
Predicted Functional Partners:
PBAL39_19449
Putative ECF-type RNA polymerase sigma factor (190 aa)
 
 
  0.864
PBAL39_14019
RNA polymerase sigma factor (Possible RNA polymerase sigma-24 factor) (181 aa)
 
 
  0.852
PBAL39_16294
RNA polymerase ECF-type sigma factor (202 aa)
   
 
  0.832
PBAL39_22115
RNA polymerase ECF-type sigma factor (187 aa)
 
 
  0.809
PBAL39_18709
RNA polymerase ECF-type sigma factor (179 aa)
 
 
  0.807
PBAL39_19904
Putative FecR (340 aa)
   
          0.778
PBAL39_03369
Putative anti-sigma factor (349 aa)
   
          0.778
PBAL39_20019
RNA polymerase ECF-type sigma factor (192 aa)
 
 
  0.771
PBAL39_12378
Putative anti sigma factor (349 aa)
   
          0.760
PBAL39_07310
RNA polymerase sigma factor (Possible RNA polymerase sigma-24 factor) (183 aa)
 
 
  0.747
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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