STRINGSTRING
PBAL39_16389 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_16389" - Transcriptional regulator in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_16389Transcriptional regulator (293 aa)    
Predicted Functional Partners:
PBAL39_16384
Short-chain dehydrogenase (271 aa)
 
          0.727
PBAL39_19534
HI0933-like protein (145 aa)
   
          0.615
PBAL39_16394
Acetyltransferase, GNAT family protein (166 aa)
              0.586
PBAL39_16379
Transcriptional regulator, AraC family protein (310 aa)
 
       
0.576
PBAL39_16399
Transcriptional regulator, MarR family protein (161 aa)
              0.574
PBAL39_24103
Putative AraC family transcriptional regulator (303 aa)
   
          0.529
PBAL39_19005
Putative AraC family transcriptional regulator (299 aa)
   
          0.491
PBAL39_16234
Transcriptional regulator (302 aa)
   
          0.485
PBAL39_00752
Putative AraC-family regulatory protein (283 aa)
   
          0.478
PBAL39_23722
Transcriptional regulator (306 aa)
   
          0.459
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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