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PBAL39_16424 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_16424" - RNA polymerase ECF-type sigma factor in Pedobacter sp. BAL39
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_16424RNA polymerase ECF-type sigma factor (201 aa)    
Predicted Functional Partners:
PBAL39_11777
Putative RNA polymerase sigma factor (194 aa)
   
          0.768
PBAL39_23332
Putative RNA polymerase ECF-type sigma factor (177 aa)
   
          0.765
PBAL39_17086
Sigma-24 (FecI-like) protein (171 aa)
   
          0.764
PBAL39_11897
RNA polymerase, sigma-24 subunit, ECF subfamily protein (150 aa)
   
          0.761
PBAL39_06811
RNA polymerase sigma factor (186 aa)
   
          0.761
PBAL39_23047
RNA polymerase sigma-70 factor, ECF subfamily protein (167 aa)
   
          0.759
PBAL39_24038
RNA polymerase sigma factor/ECF subfamily (Sigma-70) (191 aa)
   
          0.757
PBAL39_07560
Putative extracytoplasmic function alternative sigma factor (177 aa)
   
          0.749
PBAL39_17704
RNA polymerase ECF-type sigma factor (177 aa)
   
          0.738
PBAL39_11327
Putative RNA polymerase ECF-type sigma factor (191 aa)
   
          0.701
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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