STRINGSTRING
PBAL39_16499 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_16499" - Alpha-L-rhamnosidase in Pedobacter sp. BAL39
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_16499Alpha-L-rhamnosidase (792 aa)    
Predicted Functional Partners:
PBAL39_02382
Oxidoreductase domain protein (452 aa)
   
          0.708
PBAL39_16611
Putative glycosyslhydrolase (1031 aa)
 
          0.593
PBAL39_18389
Probable acylaminoacyl-peptidase (947 aa)
   
          0.534
PBAL39_06751
Uncharacterized protein (369 aa)
   
        0.521
PBAL39_16504
RNA polymerase ECF-type sigma factor (187 aa)
              0.493
PBAL39_23717
L-arabinose isomerase ; Catalyzes the conversion of L-arabinose to L-ribulose (486 aa)
 
          0.491
PBAL39_13265
Uncharacterized protein (286 aa)
   
          0.470
PBAL39_03282
Uncharacterized protein (834 aa)
   
          0.467
PBAL39_14799
Glycoside hydrolase family 2, sugar binding protein (1081 aa)
 
          0.410
PBAL39_02407
Putative large, multifunctional secreted protein (477 aa)
   
          0.402
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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