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PBAL39_16896 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_16896" - ATP-dependent DNA ligase in Pedobacter sp. BAL39
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
PBAL39_16896ATP-dependent DNA ligase (908 aa)    
Predicted Functional Partners:
PBAL39_21660
DNA polymerase III subunit beta ; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3’ to 5’ exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP- independent) along duplex DNA (374 aa)
     
  0.926
ku
Non-homologous end joining protein Ku ; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5’- and 3’- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD (254 aa)
 
   
  0.924
PBAL39_12007
DNA polymerase I (937 aa)
   
  0.900
PBAL39_20685
DNA polymerase IV, family X (542 aa)
 
  0.874
PBAL39_18274
DNA ligase (530 aa)
 
 
0.868
PBAL39_18269
mRNA 3’’’’-end processing factor (348 aa)
 
  0.862
PBAL39_13477
Uncharacterized protein (313 aa)
 
  0.851
PBAL39_23062
Exodeoxyribonuclease III (Exonuclease III) (260 aa)
   
 
  0.786
PBAL39_11687
Exodeoxyribonuclease III (256 aa)
   
 
  0.786
PBAL39_17654
Ribonucleoside-diphosphate reductase ; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides (696 aa)
     
   
  0.745
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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