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PBAL39_17086 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_17086" - Sigma-24 in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_17086Sigma-24 (FecI-like) protein (171 aa)    
Predicted Functional Partners:
PBAL39_24345
RNA polymerase ECF-type sigma factor (198 aa)
   
          0.769
PBAL39_16424
RNA polymerase ECF-type sigma factor (201 aa)
   
          0.764
PBAL39_25095
Putative RNA polymerase sigma factor (152 aa)
   
          0.750
PBAL39_20950
RNA polymerase ECF-type sigma factor (199 aa)
   
          0.739
PBAL39_24038
RNA polymerase sigma factor/ECF subfamily (Sigma-70) (191 aa)
   
          0.713
PBAL39_00702
RNA polymerase sigma factor (Possible RNA polymerase sigma-24 factor) (197 aa)
   
          0.618
PBAL39_00195
RNA polymerase ECF-type sigma factor (199 aa)
   
          0.611
PBAL39_25610
Putative transmembrane sensor/regulatory protein (335 aa)
   
 
  0.601
PBAL39_24350
Putative anti-sigma factor (397 aa)
   
 
  0.601
PBAL39_23842
Putative anti-sigma factor (380 aa)
   
 
  0.601
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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