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PBAL39_17279 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_17279" - Putative RNA polymerase sigma factor in Pedobacter sp. BAL39
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_17279Putative RNA polymerase sigma factor (188 aa)    
Predicted Functional Partners:
PBAL39_25615
RNA polymerase ECF-type sigma factor (179 aa)
   
          0.565
PBAL39_07690
RNA polymerase ECF-type sigma factor (203 aa)
   
          0.550
PBAL39_22115
RNA polymerase ECF-type sigma factor (187 aa)
   
          0.491
PBAL39_17274
Beta-xylosidase (1,4-beta-D-xylan xylosidase) (546 aa)
              0.483
PBAL39_14409
RNA polymerase sigma factor (Possible RNA polymerase sigma-24 factor) (207 aa)
   
          0.480
PBAL39_07310
RNA polymerase sigma factor (Possible RNA polymerase sigma-24 factor) (183 aa)
   
          0.464
PBAL39_03474
RNA polymerase ECF-type sigma factor (200 aa)
   
          0.460
PBAL39_12378
Putative anti sigma factor (349 aa)
   
          0.459
PBAL39_07210
RNA polymerase sigma factor (Possible RNA polymerase sigma-24 factor) (194 aa)
   
          0.449
PBAL39_03819
Putative RNA polymerase ECF-type sigma factor (190 aa)
   
          0.439
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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