STRINGSTRING
PBAL39_18274 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_18274" - DNA ligase in Pedobacter sp. BAL39
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_18274DNA ligase (530 aa)    
Predicted Functional Partners:
PBAL39_18269
mRNA 3’’’’-end processing factor (348 aa)
  0.998
PBAL39_13477
Uncharacterized protein (313 aa)
  0.970
PBAL39_18284
ICC-like phosphoesterase (212 aa)
 
          0.949
PBAL39_18279
ATP-dependent helicase (852 aa)
 
          0.949
PBAL39_21660
DNA polymerase III subunit beta ; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3’ to 5’ exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP- independent) along duplex DNA (374 aa)
     
  0.926
PBAL39_12007
DNA polymerase I (937 aa)
     
  0.895
PBAL39_16896
ATP-dependent DNA ligase (908 aa)
 
 
0.868
ligA
Polydeoxyribonucleotide synthase [NAD(+)] ; DNA ligase that catalyzes the formation of phosphodiester linkages between 5’-phosphoryl and 3’-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA (671 aa)
     
 
  0.850
PBAL39_20685
DNA polymerase IV, family X (542 aa)
   
  0.848
PBAL39_17654
Ribonucleoside-diphosphate reductase ; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides (696 aa)
     
   
  0.745
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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