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STRINGSTRING
EDM36940.1 protein (Pedobacter sp. BAL39) - STRING interaction network
"EDM36940.1" - annotation not available in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM36940.1annotation not available (85 aa)    
Predicted Functional Partners:
EDM36939.1
Short-chain dehydrogenase/reductase SDR; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family (285 aa)
 
          0.908
EDM36941.1
Transcriptional regulator, AraC family protein; COG2207 AraC-type DNA-binding domain-containing proteins (304 aa)
              0.821
EDM36938.1
annotation not available (57 aa)
              0.623
EDM34423.1
Isochorismatase hydrolase; COG1335 Amidases related to nicotinamidase (77 aa)
 
          0.602
EDM34949.1
Putative short-chain dehydrogenase/oxidoreductase; COG4221 Short-chain alcohol dehydrogenase of unknown specificity; Belongs to the short-chain dehydrogenases/reductases (SDR) family (246 aa)
   
          0.508
EDM36937.1
annotation not available (240 aa)
              0.499
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter sp. BAL39
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